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Links

Exotic and emerging plant diseases

EDEN - Plant Biosecurity Management Information
National Science Advisory Board for Biosecurity

Sudden Oak Death

Phytophthora e-course: Training for nursery growers
Online Guide to Plant Disease Control
Plant Plague: Sudden Oak Death (Quest popular science video)
California Oak Mortality Task Force
Sudden Oak Death in Oregon
University of California Cooperative Extension in Marin County
University of California Monitoring and Mapping site
Nursery Guidelines for P. ramorum in Nurseries
Nursery Guide for Diseases caused by P. ramorum on Ornamentals
Guide for Oregon Nurseries
ODA SOD information
CDFA Science Advisory Panel on P. ramorum in the Nursery Industry
"P. ramorum: Educate to Detect (PRED)” training for Master Gardeners
Global Invasive Species Database - P. ramorum
Gordon & Betty Moore Foundation SOD information
Plant Diseases Caused by Phytophthora ramorum: A National Strategic Plan for USDA

Phytophthora resources

Phytophthora database
Joint genome Institute - Whole genome sequence of P. ramorum and P. sojae
VBI Phytophthora sequence and expresssion databases
World Phytophthora Collection
PhytID - ID of Phytophthora spp. by ITS Fingerprinting
Database of PCR primers for phytopathogenic fungi
Guidelines for the handling of the Rhododendron leaf test to detect Phytophthora spp. in root, soil and water samples

Population Genetics and Marker Systems

Survey of microsatellites sequenced fungal genomes
Survey of microsatellites in sequenced Phytophthora species
GSF - The Genetic Software Forum
Quantitative Genetics Resources provided by Lynch and Walsh
Nik's links to Freeware, Software and other Resources
Links to Evolution/PopBio tools
Links to Genetic Analysis Software

Biostatistics & Bioinformatics

Collection of Biostatistics Research Archive (COBRA)
Sequerome
InstaSeq
GenePattern

Statistics

StaLib: Data, software and News from the Statistics Community
SAS code for advanced experimental designs
UCLA SAS library
SAS code for Mixed Models

Phylogenetics

HYPHY: Maximum Likelihood Analysis for sequence data
SNAP Tools
Brian O'Meara's PAUP/phylogenetics help page
RepMaker
Tools for Molecular Evolution and Molecular Populations Genetics
Shortcourse - Evolutionay Quantitative Genetics (Bruce Walsh)
Alignment format conversion
Evolutionary genetics software links
Phylogenetics using R

Tree drawing
Dendroscope
Figtree
Splitstree

Research Consortia

W1147 : Managing Plant Microbe Interactions in Soil to Promote Sustainable Agriculture
W-501: Phytophthora ramorum in nursery production systems

Nursery Industry Links

Pacific Northwest Nursery IPM
Oregon State Univ. Plant Clinic
Oregon State Univ. Online Guide to Plant Disease Control
Insect management
Weed management
Plant disease
Oregon State - Integrated Plant Protection Center

Oregon State University

Department of Botany & Plant Pathology

Center for Gene Research & Biotechnology

Molecular and Cellular Biology Program

USDA ARS

Horticultural Crops Research Laboratory
USDA ARS Pacific West Area
USDA ARS

Phytophthora labs

Dave Cooke
Mike Coffey
Andre Drenth
Greg Forbes
Bill Fry
Marc Gijzen
Howard Judelson
Sophien Kamoun
Kurt Lamour
Jean Ristaino
Brett Tyler
Pieter Van West

Phytophthora ramorum labs

Clive Brasier
Matteo Garbelotto
Everett Hansen
Steve Jeffers
Frank Martin
Bob Linderman
Jennifer Parke
Dave Rizzo
Simon Shamoun
Nina Shishkoff
Paul Tooley
Sabine Werres

Horticultural Crops Research Laboratory, USDA ARS
3420 NW Orchard Ave., Corvallis, OR 97330
Voice: (541) 738-4049 • Fax: (541) 738-4025 • E-mail: grunwaln <at> science.oregonstate.edu

Last Updated: August 20, 2008